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RECOMB
1997
Springer
14 years 17 days ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
AINA
2009
IEEE
14 years 3 months ago
A Pipelined IP Forwarding Engine with Fast Update
IP address lookup is one of the most important functionalities in the router design. To meet the requirements in high speed routers consisting of linecards with 40Gbps transfer ra...
Yeim-Kuan Chang, Yen-Cheng Liu, Fang-Chen Kuo
RECOMB
2006
Springer
14 years 8 months ago
Domain Architecture in Homolog Identification
Homology identification is the first step for many genomic studies. Current methods, based on sequence comparison, can result in a substantial number of mis-assignments due to the ...
Nan Song, R. D. Sedgewick, Dannie Durand
BMCBI
2004
125views more  BMCBI 2004»
13 years 8 months ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...
ISMB
1993
13 years 9 months ago
Representation for Discovery of Protein Motifs
There are several dimensions and levels of complexity in which information on protein motifs may be available. For example, onedimensional sequence motifs may be associated with s...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...