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» Parallel Computation in Biological Sequence Analysis
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FCCM
2007
IEEE
117views VLSI» more  FCCM 2007»
14 years 2 months ago
FPGA Acceleration of Gene Rearrangement Analysis
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Jason D. Bakos
RECOMB
2002
Springer
14 years 8 months ago
Inferring Piecewise Ancestral History from Haploid Sequences
There has been considerable recent interest in the use of haplotype structure to aid in the design and analysis of case-control association studies searching for genetic predictors...
Russell Schwartz, Andrew G. Clark, Sorin Istrail
RECOMB
2001
Springer
14 years 8 months ago
Analysis techniques for microarray time-series data
We address possible limitations of publicly available data sets of yeast gene expression. We study the predictability of known regulators via time-series analysis, and show that l...
Vladimir Filkov, Steven Skiena, Jizu Zhi
ICPR
2010
IEEE
13 years 5 months ago
Graphical Model-Based Tracking of Curvilinear Structures in Bio-image Sequences
Tracking of curvilinear structures is a task of fundamental importance in the quantitative analysis of biological structures such as neurons, blood vessels, retinal interconnects,...
Pradeep Koulgi, Mehmet Emre Sargin, Kenneth Rose, ...
BMCBI
2007
109views more  BMCBI 2007»
13 years 8 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....