Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
In recent years, microprocessor manufacturers have shifted their focus from single-core to multi-core processors. To avoid burdening programmers with the responsibility of paralle...
Neil Vachharajani, Ram Rangan, Easwaran Raman, Mat...
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Processors that can simultaneously execute multiple paths of execution will only exacerbate the fetch bandwidth problem already plaguing conventional processors. On a multiple-pat...
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...