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» Parallel Phylogenetic Inference
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RECOMB
2006
Springer
14 years 8 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
BIBE
2003
IEEE
14 years 1 months ago
An Investigation of Phylogenetic Likelihood Methods
Abstract— We analyze the performance of likelihoodbased approaches used to reconstruct phylogenetic trees. Unlike other techniques such as Neighbor-Joining (NJ) and Maximum Parsi...
Tiffani L. Williams, Bernard M. E. Moret
CISS
2008
IEEE
13 years 9 months ago
Network tomography based on additive metrics
Inference of the network structure (e.g., routing topology) and dynamics (e.g., traffic matrices, link performance) is an important component in many network design and management ...
Jian Ni, Sekhar Tatikonda
WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
14 years 1 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
BMCBI
2011
12 years 11 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...