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IPPS
2009
IEEE
14 years 2 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2007
IEEE
14 years 2 months ago
Peak-Performance DFA-based String Matching on the Cell Processor
The security of your data and of your network is in the hands of intrusion detection systems, virus scanners and spam filters, which are all critically based on string matching. ...
Daniele Paolo Scarpazza, Oreste Villa, Fabrizio Pe...
TCS
2011
13 years 2 months ago
Highly concurrent multi-word synchronization
d Abstract) Hagit Attiya and Eshcar Hillel Department of Computer Science, Technion The design of concurrent data structures is greatly facilitated by the availability of synchroni...
Hagit Attiya, Eshcar Hillel
IPPS
2009
IEEE
14 years 2 months ago
Scaling communication-intensive applications on BlueGene/P using one-sided communication and overlap
In earlier work, we showed that the one-sided communication model found in PGAS languages (such as UPC) offers significant advantages in communication efficiency by decoupling d...
Rajesh Nishtala, Paul Hargrove, Dan Bonachea, Kath...
ICPP
2008
IEEE
14 years 2 months ago
Scalable Techniques for Transparent Privatization in Software Transactional Memory
—We address the recently recognized privatization problem in software transactional memory (STM) runtimes, and introduce the notion of partially visible reads (PVRs) to heuristic...
Virendra J. Marathe, Michael F. Spear, Michael L. ...