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IJBRA
2006
111views more  IJBRA 2006»
13 years 7 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
IPPS
2007
IEEE
14 years 1 months ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
SPAA
2005
ACM
14 years 1 months ago
Using elimination to implement scalable and lock-free FIFO queues
This paper shows for the first time that elimination, a scaling technique formerly applied only to counters and LIFO structures, can be applied to FIFO data structures, specific...
Mark Moir, Daniel Nussbaum, Ori Shalev, Nir Shavit
ANCS
2006
ACM
13 years 11 months ago
Efficient memory utilization on network processors for deep packet inspection
Deep Packet Inspection (DPI) refers to examining both packet header and payload to look for predefined patterns, which is essential for network security, intrusion detection and c...
Piti Piyachon, Yan Luo
SPAA
2010
ACM
13 years 7 months ago
Buffer-space efficient and deadlock-free scheduling of stream applications on multi-core architectures
We present a scheduling algorithm of stream programs for multi-core architectures called team scheduling. Compared to previous multi-core stream scheduling algorithms, team schedu...
JongSoo Park, William J. Dally