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» Parallel programming with object assemblies
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HPDC
2000
IEEE
14 years 4 days ago
Event Services for High Performance Computing
The Internet and the Grid are changing the face of high performance computing. Rather than tightly-coupled SPMD-style components running in a single cluster, on a parallel machine...
Greg Eisenhauer, Fabián E. Bustamante, Kars...
IPPS
2009
IEEE
14 years 2 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 5 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
VL
2003
IEEE
139views Visual Languages» more  VL 2003»
14 years 1 months ago
Programming in a data factory
Among the advantages of visual dataflow programming is that it can give the user a sense of location for the data in a computation. This can help novices build a mental picture of...
Steven L. Tanimoto
JCC
2008
125views more  JCC 2008»
13 years 7 months ago
Efficient electronic integrals and their generalized derivatives for object oriented implementations of electronic structure cal
: For the new parallel implementation of electronic structure methods in ACES III (Lotrich et al., in preparation) the present state-of-the-art algorithms for the evaluation of ele...
Norbert Flocke, Victor Lotrich