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» Parallelism in Gene Assembly
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SC
2009
ACM
14 years 2 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
BMCBI
2007
123views more  BMCBI 2007»
13 years 7 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
PPSN
2004
Springer
14 years 23 days ago
A Simple Two-Module Problem to Exemplify Building-Block Assembly Under Crossover
Theoretically and empirically it is clear that a genetic algorithm with crossover will outperform a genetic algorithm without crossover in some fitness landscapes, and vice versa i...
Richard A. Watson
PVM
2009
Springer
14 years 1 months ago
Experiences Running a Parallel Answer Set Solver on Blue Gene
Abstract. This paper presents the concept of parallelisation of a solver for Answer Set Programming (ASP). While there already exist some approaches to parallel ASP solving, there ...
Lars Schneidenbach, Bettina Schnor, Martin Gebser,...
ISCAS
2005
IEEE
123views Hardware» more  ISCAS 2005»
14 years 1 months ago
Sub-operation parallelism optimization in SIMD processor synthesis and its experimental evaluations
Abstract— In this paper, we propose a sub-operation parallelism optimization algorithm in SIMD processor synthesis. Given an initial assembly code and timing constraints, our alg...
Nozomu Togawa, Hideki Kawazu, Jumpei Uchida, Yuich...