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» Parallelism in Gene Assembly
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FUIN
2006
79views more  FUIN 2006»
13 years 7 months ago
Simple Gene Assembly Is Deterministic
We investigate in this paper a simple intramolecular model for gene assembly in ciliates. Unlike the general intramolecular model, the folds that a micronuclear chromosome may for...
Miika Langille, Ion Petre
EOR
2006
65views more  EOR 2006»
13 years 7 months ago
Generation of assembly graphs by systematic analysis of assembly structures
: Aimed at detection of parallel assembly modes, a method for assembly graph construction is described that is based on the systematic generation and analysis of precedence relatio...
Alfred J. D. Lambert
BMCBI
2007
151views more  BMCBI 2007»
13 years 7 months ago
Minimus: a fast, lightweight genome assembler
Background: Genome assemblers have grown very large and complex in response to the need for algorithms to handle the challenges of large whole-genome sequencing projects. Many of ...
Daniel D. Sommer, Arthur L. Delcher, Steven L. Sal...
NAR
2008
122views more  NAR 2008»
13 years 7 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...
BIRTHDAY
2004
Springer
14 years 23 days ago
Formal Properties of Gene Assembly: Equivalence Problem for Overlap Graphs
del based on (overlap) graphs. The latter is more abstract because the translation of legal strings into overlap graphs is not injective. In this paper we consider and solve the ov...
Tero Harju, Ion Petre, Grzegorz Rozenberg