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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 3 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
ICS
2005
Tsinghua U.
14 years 2 months ago
Think globally, search locally
A key step in program optimization is the determination of optimal values for code optimization parameters such as cache tile sizes and loop unrolling factors. One approach, which...
Kamen Yotov, Keshav Pingali, Paul Stodghill
ICS
2007
Tsinghua U.
14 years 3 months ago
Performance driven data cache prefetching in a dynamic software optimization system
Software or hardware data cache prefetching is an efficient way to hide cache miss latency. However effectiveness of the issued prefetches have to be monitored in order to maximi...
Jean Christophe Beyler, Philippe Clauss
CLUSTER
2003
IEEE
14 years 2 months ago
Compiler Optimized Remote Method Invocation
We further increase the efficiency of Java RMI programs. Where other optimizing re-implementations of RMI use pre-processors to create stubs and skeletons and to create class spe...
Ronald Veldema, Michael Philippsen
ACRI
2004
Springer
14 years 2 months ago
Optimizing the Behavior of a Moving Creature in Software and in Hardware
We have investigated a problem where the goal is to find automatically the best rule for a cell in the cellular automata model. The cells are either of type OBSTACLE, EMPTY or CRE...
Mathias Halbach, Wolfgang Heenes, Rolf Hoffmann, J...