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IPPS
2009
IEEE
14 years 5 months ago
Revisiting communication performance models for computational clusters
—In this paper, we analyze restrictions of traditional models affecting the accuracy of analytical prediction of the execution time of collective communication operations. In par...
Alexey L. Lastovetsky, Vladimir Rychkov, Maureen O...
RECOMB
2011
Springer
13 years 1 months ago
Rich Parameterization Improves RNA Structure Prediction
Motivation. Current approaches to RNA structure prediction range from physics-based methods, which rely on thousands of experimentally-measured thermodynamic parameters, to machin...
Shay Zakov, Yoav Goldberg, Michael Elhadad, Michal...
CMSB
2009
Springer
14 years 2 months ago
On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction Pathways for Angiogenesis Process
In this paper we consider the modeling of a selected portion of signal transduction events involved in the angiogenesis process. The detailed model of this process contains a large...
Lucia Napione, Daniele Manini, Francesca Cordero, ...
JCB
2006
91views more  JCB 2006»
13 years 10 months ago
Reverse Engineering Discrete Dynamical Systems from Data Sets with Random Input Vectors
Recently a new algorithm for reverse engineering of biochemical networks was developed by Laubenbacher and Stigler. It is based on methods from computational algebra and finds mos...
Winfried Just
NIPS
2007
14 years 6 days ago
Learning with Tree-Averaged Densities and Distributions
We utilize the ensemble of trees framework, a tractable mixture over superexponential number of tree-structured distributions [1], to develop a new model for multivariate density ...
Sergey Kirshner