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JSC
2010
132views more  JSC 2010»
13 years 5 months ago
Binary codes from the line graph of the n-cube
We examine designs and binary codes associated with the line graph of the n-cube Qn, i.e. the Hamming graph H(n, 2). We find the automorphism groups and the parameters of the cod...
W. Fish, Jennifer D. Key, E. Mwambene
ISAMI
2010
13 years 5 months ago
Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy
Probabilistic models of languages are fundamental to understand and learn the profile of the subjacent code in order to estimate its entropy, enabling the verification and predicti...
Sérgio A. D. Deusdado, Paulo Carvalho
BMCBI
2007
107views more  BMCBI 2007»
13 years 7 months ago
antiCODE: a natural sense-antisense transcripts database
Background: Natural antisense transcripts (NATs) are endogenous RNA molecules that exhibit partial or complete complementarity to other RNAs, and that may contribute to the regula...
Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shugu...
JUCS
2002
73views more  JUCS 2002»
13 years 7 months ago
Some Remarks on Codes Defined by Petri Nets
: With any Petri net we associated its CPN language which consists of all sequences of transitions which reach a marking with an empty place whereas all proper prefixes of the sequ...
Masami Ito, Jürgen Dassow, Ralf Stiebe
BMCBI
2011
13 years 2 months ago
PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination
Background: We present a novel method to encode ambiguously aligned regions in fixed multiple sequence alignments by ‘Pairwise Identity and Cost Scores Ordination’ (PICS-Ord)....
Robert K. Luecking, Brendan P. Hodkinson, Alexandr...