Sciweavers

570 search results - page 23 / 114
» Partitioned optimization algorithms for multiple sequence al...
Sort
View
NAR
2010
140views more  NAR 2010»
13 years 4 months ago
GUIDANCE: a web server for assessing alignment confidence scores
Evaluating the accuracy of multiple sequence alignment (MSA) is critical for virtually every comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE ...
Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy La...
EVOW
2010
Springer
14 years 1 months ago
Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments
A challenging problem in bioinformatics is the detection of residues that account for protein function specificity, not only in order to gain deeper insight in the nature of functi...
Elena Marchiori
BMCBI
2010
118views more  BMCBI 2010»
13 years 10 months ago
Towards realistic benchmarks for multiple alignments of non-coding sequences
Background: With the continued development of new computational tools for multiple sequence alignment, it is necessary today to develop benchmarks that aid the selection of the mo...
Jaebum Kim, Saurabh Sinha
HICSS
2003
IEEE
90views Biometrics» more  HICSS 2003»
14 years 3 months ago
A Prototype for Multiple Whole Genome Alignment
In this paper, we briefly describe a prototype of the software system we have developed for multiple whole genome alignment. To develop our algorithm, we have to solve several pr...
Jitender S. Deogun, Fangrui Ma, Jingyi Yang, Andre...
BMCBI
2008
140views more  BMCBI 2008»
13 years 10 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh