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» Partitioned optimization algorithms for multiple sequence al...
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BIOINFORMATICS
2006
70views more  BIOINFORMATICS 2006»
15 years 2 months ago
Probalign: multiple sequence alignment using partition function posterior probabilities
Usman Roshan, Dennis R. Livesay
102
Voted
RECOMB
2004
Springer
16 years 2 months ago
Aligning alignments exactly
d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...
John D. Kececioglu, Dean Starrett
119
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CIBCB
2007
IEEE
15 years 8 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
148
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BIOCOMP
2006
15 years 3 months ago
PAC: Progressive Alignment with Consensus Sequences
Computation of multiple sequence alignments is one of the major open problems in computational molecular biology. The purpose of this study was to provide a new method, PAC (Progre...
Ke Liu, Mansur H. Samadzadeh
113
Voted
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 8 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang