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» Partitioning datasets based on equalities among parameters
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BMCBI
2006
94views more  BMCBI 2006»
13 years 9 months ago
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology
Background: Proteins control and mediate many biological activities of cells by interacting with other protein partners. This work presents a statistical model to predict protein ...
Chung-Yen Lin, Shu-Hwa Chen, Chi-Shiang Cho, Chia-...
BMCBI
2010
164views more  BMCBI 2010»
13 years 10 months ago
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
Background: The pan-genome of a bacterial species consists of a core and an accessory gene pool. The accessory genome is thought to be an important source of genetic variability i...
Chad Laing, Cody Buchanan, Eduardo N. Taboada, Yon...
BMCBI
2010
193views more  BMCBI 2010»
13 years 10 months ago
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
Tomás Pluskal, Sandra Castillo, Alejandro V...
WSDM
2012
ACM
309views Data Mining» more  WSDM 2012»
12 years 5 months ago
Mining contrastive opinions on political texts using cross-perspective topic model
This paper presents a novel opinion mining research problem, which is called Contrastive Opinion Modeling (COM). Given any query topic and a set of text collections from multiple ...
Yi Fang, Luo Si, Naveen Somasundaram, Zhengtao Yu
BMCBI
2007
107views more  BMCBI 2007»
13 years 10 months ago
antiCODE: a natural sense-antisense transcripts database
Background: Natural antisense transcripts (NATs) are endogenous RNA molecules that exhibit partial or complete complementarity to other RNAs, and that may contribute to the regula...
Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shugu...