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» Partitioning mathematical programs for parallel solution
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BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
14 years 4 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
IEEEPACT
2006
IEEE
14 years 3 months ago
Fast, automatic, procedure-level performance tuning
This paper presents an automated performance tuning solution, which partitions a program into a number of tuning sections and finds the best combination of compiler options for e...
Zhelong Pan, Rudolf Eigenmann
SC
2009
ACM
14 years 4 months ago
Bridging parallel and reconfigurable computing with multilevel PGAS and SHMEM+
Reconfigurable computing (RC) systems based on FPGAs are becoming an increasingly attractive solution to building parallel systems of the future. Applications targeting such syste...
Vikas Aggarwal, Alan D. George, K. Yalamanchili, C...
HPDC
2006
IEEE
14 years 3 months ago
Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O
This paper addresses the problem of efficient execution of a batch of data-intensive tasks with batch-shared I/O behavior, on coupled storage and compute clusters. Two scheduling...
Gaurav Khanna 0002, Nagavijayalakshmi Vydyanathan,...
PVLDB
2008
126views more  PVLDB 2008»
13 years 9 months ago
Parallelizing query optimization
Many commercial RDBMSs employ cost-based query optimization exploiting dynamic programming (DP) to efficiently generate the optimal query execution plan. However, optimization tim...
Wook-Shin Han, Wooseong Kwak, Jinsoo Lee, Guy M. L...