We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
This paper presents an automated performance tuning solution, which partitions a program into a number of tuning sections and finds the best combination of compiler options for e...
Reconfigurable computing (RC) systems based on FPGAs are becoming an increasingly attractive solution to building parallel systems of the future. Applications targeting such syste...
Vikas Aggarwal, Alan D. George, K. Yalamanchili, C...
This paper addresses the problem of efficient execution of a batch of data-intensive tasks with batch-shared I/O behavior, on coupled storage and compute clusters. Two scheduling...