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BMCBI
2007
164views more  BMCBI 2007»
13 years 8 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
BMCBI
2007
139views more  BMCBI 2007»
13 years 8 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
GECCO
2005
Springer
218views Optimization» more  GECCO 2005»
14 years 2 months ago
Particle swarm optimization for analysis of mass spectral serum profiles
Serum profiling using mass spectrometry is an emerging technology with a great potential to provide biomarkers for complex diseases such as cancer. However, protein profiles obtai...
Habtom W. Ressom, Rency S. Varghese, Daniel Saha, ...
KDD
2006
ACM
208views Data Mining» more  KDD 2006»
14 years 9 months ago
Frequent subgraph mining in outerplanar graphs
In recent years there has been an increased interest in frequent pattern discovery in large databases of graph structured objects. While the frequent connected subgraph mining pro...
Tamás Horváth, Jan Ramon, Stefan Wro...
CORR
2008
Springer
114views Education» more  CORR 2008»
13 years 8 months ago
Temporal Support of Regular Expressions in Sequential Pattern Mining
Classic algorithms for sequential pattern discovery, return all frequent sequences present in a database. Since, in general, only a few ones are interesting from a user's poin...
Leticia I. Gómez, Bart Kuijpers, Alejandro ...