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» Pattern Matching in Degenerate DNA RNA Sequences
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BMCBI
2010
147views more  BMCBI 2010»
13 years 7 months ago
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Background: High throughput sequencing has become an important technology for studying expression levels in many types of genomic, and particularly transcriptomic, data. One key w...
Thomas J. Hardcastle, Krystyna A. Kelly
BMCBI
2005
73views more  BMCBI 2005»
13 years 7 months ago
Evaluation of Glycine max mRNA clusters
Background: Clustering the ESTs from a large dataset representing a single species is a convenient starting point for a number of investigations into gene discovery, genome evolut...
Ronald L. Frank, Fikret Erçal
ICC
2007
IEEE
117views Communications» more  ICC 2007»
14 years 1 months ago
Applying Techniques from Frame Synchronization for Biological Sequence Analysis
— During the last years, the amount of genetic data available has increased rapidly which creates the demand for advanced techniques for their interpretation. In the following, w...
Johanna Weindl, Joachim Hagenauer
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
14 years 1 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
BMCBI
2008
132views more  BMCBI 2008»
13 years 7 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...