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» Performance Analysis of Sequence Alignment Applications
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CVPR
2008
IEEE
14 years 11 months ago
Parameterized Kernel Principal Component Analysis: Theory and applications to supervised and unsupervised image alignment
Parameterized Appearance Models (PAMs) (e.g. eigentracking, active appearance models, morphable models) use Principal Component Analysis (PCA) to model the shape and appearance of...
Fernando De la Torre, Minh Hoai Nguyen
NAR
2008
101views more  NAR 2008»
13 years 9 months ago
PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
We have developed PVS (Protein Variability Server), a web-based tool that uses several variability metrics to compute the absolute site variability in multiple protein-sequence al...
Maria Garcia-Boronat, Carmen M. Diez-Rivero, Ellis...
BMCBI
2007
102views more  BMCBI 2007»
13 years 9 months ago
A comprehensive system for evaluation of remote sequence similarity detection
Background: Accurate and sensitive performance evaluation is crucial for both effective development of better structure prediction methods based on sequence similarity, and for th...
Yuan Qi, Ruslan Sadreyev, Yong Wang, Bong-Hyun Kim...
IPPS
2005
IEEE
14 years 2 months ago
High-Performance Direct Pairwise Comparison of Large Genomic Sequences
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
Christopher Mueller, Mehmet M. Dalkilic, Andrew Lu...
ISMB
1996
13 years 10 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal