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» Performance Analysis of Sequence Alignment Applications
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BMCBI
2005
134views more  BMCBI 2005»
13 years 9 months ago
Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST)
Background: BLAST is one of the most common and useful tools for Genetic Research. This paper describes a software application we have termed Windows .NET Distributed Basic Local ...
Scot E. Dowd, Joaquin Zaragoza, Javier R. Rodrigue...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 7 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
BMCBI
2006
166views more  BMCBI 2006»
13 years 9 months ago
SEQOPTICS: a protein sequence clustering system
Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zh...
BMCBI
2005
130views more  BMCBI 2005»
13 years 9 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
DASFAA
2010
IEEE
148views Database» more  DASFAA 2010»
14 years 1 months ago
Competitive Privacy: Secure Analysis on Integrated Sequence Data
Sequence data analysis has been extensively studied in the literature. However, most previous work focuses on analyzing sequence data from a single source or party. In many applica...
Raymond Chi-Wing Wong, Eric Lo