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» Performance Analysis of Sequence Alignment Applications
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138
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BMCBI
2005
134views more  BMCBI 2005»
15 years 2 months ago
Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST)
Background: BLAST is one of the most common and useful tools for Genetic Research. This paper describes a software application we have termed Windows .NET Distributed Basic Local ...
Scot E. Dowd, Joaquin Zaragoza, Javier R. Rodrigue...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
15 years 12 days ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
145
Voted
BMCBI
2006
166views more  BMCBI 2006»
15 years 2 months ago
SEQOPTICS: a protein sequence clustering system
Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zh...
BMCBI
2005
130views more  BMCBI 2005»
15 years 2 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
DASFAA
2010
IEEE
148views Database» more  DASFAA 2010»
15 years 6 months ago
Competitive Privacy: Secure Analysis on Integrated Sequence Data
Sequence data analysis has been extensively studied in the literature. However, most previous work focuses on analyzing sequence data from a single source or party. In many applica...
Raymond Chi-Wing Wong, Eric Lo