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» Performance Analysis of Sequence Alignment Applications
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CIKM
2009
Springer
14 years 1 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
CLEF
2008
Springer
13 years 11 months ago
Robust Question Answering for Speech Transcripts: UPC Experience in QAst 2008
This paper describes the participation of the Technical University of Catalonia in the CLEF 2008 Question Answering on Speech Transcripts track. We have participated in the Englis...
Pere Comas, Jordi Turmo
DELTA
2008
IEEE
14 years 3 months ago
High Performance FPGA Implementation of the Mersenne Twister
Efficient generation of random and pseudorandom sequences is of great importance to a number of applications [4]. In this paper, an efficient implementation of the Mersenne Twis...
Shrutisagar Chandrasekaran, Abbes Amira
ISMB
2000
13 years 10 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
ALMOB
2006
113views more  ALMOB 2006»
13 years 9 months ago
Inverse bifurcation analysis: application to simple gene systems
Background: Bifurcation analysis has proven to be a powerful method for understanding the qualitative behavior of gene regulatory networks. In addition to the more traditional for...
James Lu, Heinz W. Engl, Peter Schuster