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» Performance Analysis of Sequence Alignment Applications
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BMCBI
2007
149views more  BMCBI 2007»
13 years 9 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
14 years 2 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
BMCBI
2011
13 years 23 days ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
PR
2011
13 years 4 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
CLEF
2011
Springer
12 years 9 months ago
External Plagiarism Detection using Information Retrieval and Sequence Alignment - Notebook for PAN at CLEF 2011
Abstract This paper describes the University of Sheffield entry for the 3rd International Competition on Plagiarism Detection which attempted the monolingual external plagiarism d...
Rao Muhammad Adeel Nawab, Mark Stevenson, Paul D. ...