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BMCBI
2006
195views more  BMCBI 2006»
13 years 10 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
CIBCB
2007
IEEE
14 years 4 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
KDD
2009
ACM
219views Data Mining» more  KDD 2009»
14 years 10 months ago
Structured correspondence topic models for mining captioned figures in biological literature
A major source of information (often the most crucial and informative part) in scholarly articles from scientific journals, proceedings and books are the figures that directly pro...
Amr Ahmed, Eric P. Xing, William W. Cohen, Robert ...
CIKM
2006
Springer
14 years 1 months ago
Validating associations in biological databases
To cope with the large amount of biological sequences being produced, a significant number of genes and proteins have been annotated by automated tools. A protein annotation is an...
Francisco M. Couto, Mário J. Silva, Pedro C...
CLUSTER
2005
IEEE
13 years 12 months ago
SymbioticSphere: Towards an Autonomic Grid Network System
This paper describes SymbioticSphere, a novel biologically-inspired architecture that allows grid systems (application services and middleware platforms) to be scalable and adapti...
Paskorn Champrasert, Chonho Lee, Junichi Suzuki