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ISAMI
2010
13 years 6 months ago
Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy
Probabilistic models of languages are fundamental to understand and learn the profile of the subjacent code in order to estimate its entropy, enabling the verification and predicti...
Sérgio A. D. Deusdado, Paulo Carvalho
BIOCOMP
2009
13 years 6 months ago
Simulating Spatial Partial Differential Equations with Cellular Automata
Abstract-- Spatial partial differential equations are commonly used to describe systems of biological entities, such as patterns created by desert vegetation and biovermiculation g...
Brian Strader, Keith E. Schubert, Ernesto Gomez, J...
BICOB
2010
Springer
14 years 1 months ago
Biological Relevance Detection via Network Dynamic Analysis
Most existing approaches for gene selection are based on evaluating the statistical relevance. However, there are remarkable discrepancies between statistical relevance and biolog...
Zheng Zhao, Huan Liu, Jiangxin Wang, Yung Chang
BMCBI
2010
126views more  BMCBI 2010»
13 years 8 months ago
Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway
Background: The development and simulation of dynamic models of terpenoid biosynthesis has yielded a systems perspective that provides new insights into how the structure of this ...
Aliah Hazmah Hawari, Zeti-Azura Mohamed-Hussein
TCBB
2010
80views more  TCBB 2010»
13 years 7 months ago
On the Importance of Comprehensible Classification Models for Protein Function Prediction
—The literature on protein function prediction is currently dominated by works aimed at maximizing predictive accuracy, ignoring the important issues of validation and interpreta...
Alex Alves Freitas, Daniela Wieser, Rolf Apweiler