Background: The biological information in genomic expression data can be understood, and computationally extracted, in the context of systems of interacting molecules. The automat...
Bruz Marzolf, Eric W. Deutsch, Patrick Moss, David...
Modeling in systems biology is concerned with using experimental information and mathematical methods to build quantitative models at different biological scales. This requires int...
Zhouyang Sun, Anthony Finkelstein, Jonathan Ashmor...
We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be t...
Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo...
Models will play a central role in the representation, storage, manipulation, and communication of knowledge in systems biology. Models capable of fulfilling such a role will like...
Background: Optimization theory has been applied to complex biological systems to interrogate network properties and develop and refine metabolic engineering strategies. For examp...
Erwin P. Gianchandani, Matthew A. Oberhardt, Antho...