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» Petascale computing with accelerators
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DEBS
2009
ACM
14 years 6 days ago
Event-based systems: opportunities and challenges at exascale
Streaming data models have been shown to be useful in many applications requiring high-performance data exchange. Application-level overlay networks are a natural way to realize t...
Greg Eisenhauer, Matthew Wolf, Hasan Abbasi, Karst...
HPDC
2010
IEEE
13 years 10 months ago
Lessons learned from moving earth system grid data sets over a 20 Gbps wide-area network
In preparation for the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report, the climate community will run the Coupled Model Intercomparison Project phase 5 (...
Rajkumar Kettimuthu, Alex Sim, Dan Gunter, Bill Al...
RECOMB
2007
Springer
14 years 9 months ago
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...
Hiroyuki Kuwahara, Chris J. Myers
IPPS
2009
IEEE
14 years 3 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
CLUSTER
2000
IEEE
14 years 1 months ago
Multi-Grid Acceleration of a SIMPLE-Based CFD-Code and Aspects of Parallelization
The present study treats the calculation of the continuous phase of a multiphase flow, i.e. the numerical solution of the equations for a turbulent incompressible flow. An exist...
Klaus Bernert, Thomas Frank, Hellfried Schneider, ...