Intracellular signaling pathways as well as the interactions and coordination that exist among them are complex and difficult to visualize and understand. Computer-based models of...
In this paper we present a survey on methods for the synthesis of Petri nets from behavioral descriptions given as languages. We consider place/transition Petri nets, elementary P...
Robert Lorenz, Sebastian Mauser, Gabriel Juh&aacut...
Abstract. We report on the results of an investigation into the integration of Petri nets and ordinary differential equations (ODEs) for the modelling and analysis of biochemical n...
: In this paper a proposal for the Biology Petri Net Markup Language (BioPNML) is presented. The concepts and terminology of the interchange format as well as its syntax that is ba...
We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which unifies the qualitative, stochastic and continuous paradigms. Each per...