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» Phylogenetic Comparative Assembly
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BMCBI
2008
125views more  BMCBI 2008»
13 years 6 months ago
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...
Frédéric Lemoine, Bernard Labedan, O...
BMCBI
2008
128views more  BMCBI 2008»
13 years 6 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
BMCBI
2010
160views more  BMCBI 2010»
13 years 1 months ago
eHive: An Artificial Intelligence workflow system for genomic analysis
Background: The Ensembl project produces updates to its comparative genomics resources with each of its several releases per year. During each release cycle approximately two week...
Jessica Severin, Kathryn Beal, Albert J. Vilella, ...
SSDBM
2006
IEEE
156views Database» more  SSDBM 2006»
14 years 22 days ago
On Data and Visualization Models for Signaling Pathways
Signaling pathways are chains of interacting proteins, through which the cell converts a (usually) extracellular signal into a biological response. The number of known signaling p...
Nattakarn Ratprasartporn, Ali Cakmak, Gultekin &Ou...
HPCC
2009
Springer
13 years 11 months ago
On Instruction-Level Method for Reducing Cache Penalties in Embedded VLIW Processors
Usual cache optimisation techniques for high performance computing are difficult to apply in embedded VLIW applications. First, embedded applications are not always well structur...
Samir Ammenouche, Sid Ahmed Ali Touati, William Ja...