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» Phylogenetic Networks, Trees, and Clusters
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BMCBI
2006
144views more  BMCBI 2006»
13 years 6 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...
NOCS
2007
IEEE
14 years 1 months ago
Mesh of Tree: Unifying Mesh and MFPGA for Better Device Performances
In this paper we present a new clustered mesh FPGA architecture where each cluster local interconnect is implemented as an MFPGA tree network [6]. Unlike previous clustered mesh a...
Zied Marrakchi, Hayder Mrabet, Christian Masson, H...
RECOMB
2007
Springer
14 years 7 months ago
Beyond Galled Trees - Decomposition and Computation of Galled Networks
Reticulate networks are a type of phylogenetic network that are used to represent reticulate evolution involving hybridization, horizontal gene transfer or recombination. The simpl...
Daniel H. Huson, Tobias H. Klöpper
PCI
2005
Springer
14 years 6 days ago
Initial Experiences Porting a Bioinformatics Application to a Graphics Processor
Bioinformatics applications are one of the most relevant and compute-demanding applications today. While normally these applications are executed on clusters or dedicated parallel ...
Maria Charalambous, Pedro Trancoso, Alexandros Sta...
ECSQARU
2003
Springer
13 years 12 months ago
Computational-Workload Based Binarization and Partition of Qualitative Markov Trees for Belief Combination
Abstract. Binary join trees have been a popular structure to compute the impact of multiple belief functions initially assigned to nodes of trees or networks. Shenoy has proposed t...
Weiru Liu, Xin Hong, Kenneth Adamson