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» Phylogenetic Reconstruction from Arbitrary Gene-Order Data
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BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
BIOINFORMATICS
2007
88views more  BIOINFORMATICS 2007»
13 years 7 months ago
Maximum likelihood of phylogenetic networks
Horizontal gene transfer (HGT) is believed to be ubiquitous among bacteria, and plays a major role in their genome diversiļ¬cation as well as their ability to develop resistance t...
Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
ICCV
2007
IEEE
14 years 9 months ago
Toward Reconstructing Surfaces With Arbitrary Isotropic Reflectance : A Stratified Photometric Stereo Approach
We consider the problem of reconstructing the shape of a surface with an arbitrary, spatially varying isotropic bidirectional reflectance distribution function (BRDF), and introdu...
Neil G. Alldrin, David J. Kriegman
RECOMB
2004
Springer
14 years 7 months ago
Reconstructing reticulate evolution in species: theory and practice
We present new methods for reconstructing reticulate evolution of species due to events such as horizontal transfer or hybrid speciation; both methods are based upon extensions of...
Luay Nakhleh, Tandy Warnow, C. Randal Linder
CSB
2003
IEEE
110views Bioinformatics» more  CSB 2003»
14 years 25 days ago
Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance
A new and essentially simple method to reconstruct prokaryotic phylogenetic trees from their complete genome data without using sequence alignment is proposed. It is based on the ...
Bailin Hao, Ji Qi