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» Phylogenetic Reconstruction from Arbitrary Gene-Order Data
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BMCBI
2008
125views more  BMCBI 2008»
13 years 7 months ago
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions
Background: Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. Howe...
Martin Bader, Mohamed Ibrahim Abouelhoda, Enno Ohl...
BMCBI
2007
162views more  BMCBI 2007»
13 years 7 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
NAR
2000
120views more  NAR 2000»
13 years 7 months ago
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
The WIT (What Is There) (http://wit.mcs.anl.gov/WIT2/ ) system has been designed to support comparative analysis of sequenced genomes and to generate metabolic reconstructions bas...
Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, M...
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
13 years 9 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
ISBI
2004
IEEE
14 years 8 months ago
Tomographic Reconstruction From an Uncontrolled Sensor Trajectory
For many medical procedures 3D bone models are built from Computed Tomography (CT) or Magnetic Resonance Imaging (MRI) data, both of which are expensive and time consuming, and un...
Chris Baker, Christian Debrunner, William Hoff, Ja...