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» Physics-based simulation of biological structures
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ISBI
2011
IEEE
12 years 11 months ago
K-SVD for HARDI denoising
Noise is an important concern in high-angular resolution diffusion imaging studies because it can lead to errors in downstream analyses of white matter structure. To address this ...
Vishal Patel, Yonggang Shi, Paul M. Thompson, Arth...
JIB
2007
95views more  JIB 2007»
13 years 7 months ago
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models
The creation of quantitative, simulatable, Systems Biology Markup Language (SBML) models that accurately simulate the system under study is a time-intensive manual process that re...
Allyson L. Lister, Matthew R. Pocock, Anil Wipat
ESANN
2004
13 years 9 months ago
Modelling of biologically plausible excitatory networks: emergence and modulation of neural synchrony
To emphasize the electrical nature of information processing in the brain we use a compartmental model of single neurons. The realistic simulation of wave-like activity in the recu...
Karsten Kube, Andreas Herzog, Vadym Spravedlyvyy, ...
VRML
2004
ACM
14 years 1 months ago
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
Increasingly, biology researchers and medical practitioners are using computational tools to model and analyze dynamic systems across scales from the macro to the cellular to the ...
Nicholas F. Polys, Doug A. Bowman, Chris North, Re...
BMCBI
2010
122views more  BMCBI 2010»
13 years 7 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth