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» PiQA: An Algebra for Querying Protein Data Sets
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NAR
2011
374views Computer Vision» more  NAR 2011»
13 years 1 months ago
The BioGRID Interaction Database: 2011 update
The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms ...
Chris Stark, Bobby-Joe Breitkreutz, Andrew Chatr-a...
ER
2003
Springer
86views Database» more  ER 2003»
14 years 17 days ago
An Interpolated Volume Model for Databases
In this paper we present a volume data model amenable to querying volumes in databases. Unlike most existing volume models, which are directed towards specific applications (notab...
Tianqiu Wang, Simone Santini, Amarnath Gupta
BMCBI
2006
172views more  BMCBI 2006»
13 years 7 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
ICDE
2009
IEEE
182views Database» more  ICDE 2009»
14 years 9 months ago
Adaptive Parallelization of Queries over Dependent Web Service Calls
We have developed a system to process database queries over composed data providing web services. The queries are transformed into execution plans containing an operator that invok...
Manivasakan Sabesan, Tore Risch
ICDE
2007
IEEE
207views Database» more  ICDE 2007»
14 years 8 months ago
SIGOPT: Using Schema to Optimize XML Query Processing
There has been a great deal of work in recent years on processing and optimizing queries against XML data. Typically in these previous works, schema information is not considered,...
Stelios Paparizos, Jignesh M. Patel, H. V. Jagadis...