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» PiQA: An Algebra for Querying Protein Data Sets
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BMCBI
2005
108views more  BMCBI 2005»
13 years 7 months ago
Storing, linking, and mining microarray databases using SRS
Background: SRS (Sequence Retrieval System) has proven to be a valuable platform for storing, linking, and querying biological databases. Due to the availability of a broad range ...
Antoine Veldhoven, Don de Lange, Marcel Smid, Vict...
BMCBI
2010
133views more  BMCBI 2010»
13 years 7 months ago
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis
Background: Analysis of data from high-throughput experiments depends on the availability of well-structured data that describe the assayed biomolecules. Procedures for obtaining ...
Henning Redestig, Miyako Kusano, Atsushi Fukushima...
EDBT
2009
ACM
241views Database» more  EDBT 2009»
14 years 2 months ago
GADDI: distance index based subgraph matching in biological networks
Currently, a huge amount of biological data can be naturally represented by graphs, e.g., protein interaction networks, gene regulatory networks, etc. The need for indexing large ...
Shijie Zhang, Shirong Li, Jiong Yang
SEMWEB
2009
Springer
14 years 1 months ago
XLWrap - Querying and Integrating Arbitrary Spreadsheets with SPARQL
In this paper a novel approach is presented for generating RDF graphs of arbitrary complexity from various spreadsheet layouts. Currently, none of the available spreadsheet-to-RDF ...
Andreas Langegger, Wolfram Wöß
COMPGEOM
2007
ACM
13 years 11 months ago
Kinetic KD-trees and longest-side KD-trees
We propose a simple variant of kd-trees, called rank-based kd-trees, for sets of points in Rd . We show that a rank-based kd-tree, like an ordinary kd-tree, supports range search ...
Mohammad Ali Abam, Mark de Berg, Bettina Speckmann