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BMCBI
2007
162views more  BMCBI 2007»
13 years 7 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
CORR
2010
Springer
160views Education» more  CORR 2010»
13 years 7 months ago
New Results on Quantum Property Testing
We present several new examples of speed-ups obtainable by quantum algorithms in the context of property testing. First, motivated by sampling algorithms, we consider probability d...
Sourav Chakraborty, Eldar Fischer, Arie Matsliah, ...
CORR
2010
Springer
190views Education» more  CORR 2010»
13 years 7 months ago
Overlap properties of geometric expanders
The overlap number of a finite (d + 1)-uniform hypergraph H is the largest constant c(H) (0, 1] such that no matter how we map the vertices of H into Rd , there is a point covered...
Jacob Fox, Mikhail Gromov, Vincent Lafforgue, Assa...
BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
Background: Microarray technology produces gene expression data on a genomic scale for an endless variety of organisms and conditions. However, this vast amount of information nee...
Rainer König, Gunnar Schramm, Marcus Oswald, ...
BMCBI
2007
202views more  BMCBI 2007»
13 years 7 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...