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AINA
2006
IEEE
14 years 2 months ago
Accelerating HMMer searches on Opteron processors with minimally invasive recoding
HMMer is a widely used tool for protein sequence homology detection, as well as functional annotation of homologous protein sequences, and protein family classification. The HMMer...
Joseph I. Landman, Joydeep Ray, John Paul Walters
CODES
2001
IEEE
14 years 2 months ago
A trace transformation technique for communication refinement
Models of computation like Kahn and dataflow process networks provide convenient means for modeling signal processing applicahis is partly due to the abstract primitives that thes...
Paul Lieverse, Pieter van der Wolf, Ed F. Deprette...
DAGSTUHL
2006
14 years 4 days ago
Coxeter Lattice Paths
Supercomputing applications usually involve the repeated parallel application of discretized differential operators. Difficulties arise with higher-order discretizations their com...
Thomas J. Ashby, Anthony D. Kennedy, Stephen M. Wa...
IPSN
2007
Springer
14 years 4 months ago
Interface contracts for TinyOS
TinyOS applications are built with software components that communicate through narrow interfaces. Since components enable finegrained code reuse, this approach has been successf...
Will Archer, Philip Levis, John Regehr
WAW
2004
Springer
178views Algorithms» more  WAW 2004»
14 years 4 months ago
Communities Detection in Large Networks
We develop an algorithm to detect community structure in complex networks. The algorithm is based on spectral methods and takes into account weights and links orientations. Since t...
Andrea Capocci, Vito Domenico Pietro Servedio, Gui...