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BMCBI
2007
157views more  BMCBI 2007»
13 years 7 months ago
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...
BMCBI
2006
179views more  BMCBI 2006»
13 years 7 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
HYBRID
2009
Springer
14 years 2 months ago
Finite Automata as Time-Inv Linear Systems Observability, Reachability and More
We show that regarding finite automata (FA) as discrete, time-invariant linear systems over semimodules, allows to: (1) express FA minimization and FA determinization as particula...
Radu Grosu
STOC
2007
ACM
132views Algorithms» more  STOC 2007»
14 years 7 months ago
On the convergence of Newton's method for monotone systems of polynomial equations
Monotone systems of polynomial equations (MSPEs) are systems of fixed-point equations X1 = f1(X1, . . . , Xn), . . . , Xn = fn(X1, . . . , Xn) where each fi is a polynomial with p...
Stefan Kiefer, Michael Luttenberger, Javier Esparz...
ECBS
2009
IEEE
113views Hardware» more  ECBS 2009»
14 years 2 months ago
Modeling and Analysis of Probabilistic Timed Systems
Probabilistic models are useful for analyzing systems which operate under the presence of uncertainty. In this paper, we present a technique for verifying safety and liveness prop...
Abhishek Dubey, Derek Riley, Sherif Abdelwahed, Te...