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BMCBI
2011
13 years 3 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
OOPSLA
2009
Springer
14 years 3 months ago
Thorn: robust, concurrent, extensible scripting on the JVM
Scripting languages enjoy great popularity due their support for rapid and exploratory development. They typically have lightweight syntax, weak data privacy, dynamic typing, powe...
Bard Bloom, John Field, Nathaniel Nystrom, Johan &...
FPL
2001
Springer
123views Hardware» more  FPL 2001»
14 years 1 months ago
Compilation Increasing the Scheduling Scope for Multi-memory-FPGA-Based Custom Computing Machines
This paper presents new achievements on the automatic mapping of algorithms, written in imperative software programming languages, to custom computing machines. The reconfigurable ...
João M. P. Cardoso, Horácio C. Neto
IPPS
1997
IEEE
14 years 1 months ago
Extensible Message Passing Application Development and Debugging with Python
We describe how we have parallelized Python, an interpreted object oriented scripting language, and used it to build an extensible message-passing molecular dynamics application f...
David M. Beazley, Peter S. Lomdahl
SPAA
2010
ACM
14 years 1 months ago
Brief announcement: locality-aware load balancing for speculatively-parallelized irregular applications
Load balancing is an important consideration when running data-parallel programs. While traditional techniques trade off the cost of load imbalance with the overhead of mitigating...
Youngjoon Jo, Milind Kulkarni