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BMCBI
2010
143views more  BMCBI 2010»
13 years 7 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
JCB
2006
129views more  JCB 2006»
13 years 7 months ago
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
Genome-wide microarray designs containing millions to hundreds of millions of probes are available for a variety of mammals, including mouse and human. These genome tiling arrays ...
Brendan J. Frey, Quaid Morris, Timothy R. Hughes
BMCBI
2011
13 years 2 months ago
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
Background: The Gene Ontology (GO) Consortium organizes genes into hierarchical categories based on biological process, molecular function and subcellular localization. Tools such...
Barry Zeeberg, Hongfang Liu, Ari B. Kahn, Martin E...
CCGRID
2007
IEEE
14 years 1 months ago
Exploiting Lustre File Joining for Effective Collective IO
Lustre is a parallel file system that presents high aggregated IO bandwidth by striping file extents across many storage devices. However, our experiments indicate excessively wid...
Weikuan Yu, Jeffrey S. Vetter, Shane Canon, Song J...
PAMI
2008
152views more  PAMI 2008»
13 years 7 months ago
K-Nearest Neighbor Finding Using MaxNearestDist
Abstract-Similarity searching often reduces to finding the k nearest neighbors to a query object. Finding the k nearest neighbors is achieved by applying either a depth-first or a ...
Hanan Samet