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» Predicting Peroxisomal Proteins
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ICCAD
2008
IEEE
127views Hardware» more  ICCAD 2008»
14 years 5 months ago
Design and optimization of a digital microfluidic biochip for protein crystallization
Proteins crystallization is a commonly used technique for protein analysis and subsequent drug design. It predicts the three-dimensional arrangement of the constituent amino acids...
Tao Xu, Krishnendu Chakrabarty, Vamsee K. Pamula
ECAL
2007
Springer
14 years 2 months ago
Folding Protein-Like Structures with Open L-Systems
Abstract. Proteins, under native conditions, fold to specific 3D structures according to their 1D amino acid sequence, which in turn is defined by the genetic code. The specific...
Gemma B. Danks, Susan Stepney, Leo S. D. Caves
BIOINFORMATICS
2010
94views more  BIOINFORMATICS 2010»
13 years 8 months ago
Globally, unrelated protein sequences appear random
Motivation: To test whether protein folding constraints and secondary structure sequence preferences significantly reduce the space of amino acid words in proteins, we compared th...
Daniel T. Lavelle, William R. Pearson
JCB
2007
83views more  JCB 2007»
13 years 8 months ago
Evolutionary Networks in the Formatted Protein Sequence Space
In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
Zakharia M. Frenkel, Edward N. Trifonov
BMCBI
2008
134views more  BMCBI 2008»
13 years 8 months ago
PEPOP: Computational design of immunogenic peptides
Background: Most methods available to predict protein epitopes are sequence based. There is a need for methods using 3D information for prediction of discontinuous epitopes and de...
Violaine Moreau, Cécile Fleury, Dominique P...