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BMCBI
2006
85views more  BMCBI 2006»
13 years 10 months ago
Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy
Background: Understanding how amino acid substitutions affect protein functions is critical for the study of proteins and their implications in diseases. Although methods have bee...
Rui Jiang, Hua Yang, Fengzhu Sun, Ting Chen
BMCBI
2007
107views more  BMCBI 2007»
13 years 10 months ago
A computational approach for detecting peptidases and their specific inhibitors at the genome level
Background: Peptidases are proteolytic enzymes responsible for fundamental cellular activities in all organisms. Apparently about 2–5% of the genes encode for peptidases, irresp...
Lisa Bartoli, Remo Calabrese, Piero Fariselli, Dam...
BMCBI
2004
151views more  BMCBI 2004»
13 years 10 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
PVLDB
2008
138views more  PVLDB 2008»
13 years 10 months ago
A skip-list approach for efficiently processing forecasting queries
Time series data is common in many settings including scientific and financial applications. In these applications, the amount of data is often very large. We seek to support pred...
Tingjian Ge, Stanley B. Zdonik
ISSRE
2010
IEEE
13 years 9 months ago
The Impact of Coupling on the Fault-Proneness of Aspect-Oriented Programs: An Empirical Study
—Coupling in software applications is often used as an indicator of external quality attributes such as fault-proneness. In fact, the correlation of coupling metrics and faults i...
Rachel Burrows, Fabiano Cutigi Ferrari, Otá...