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» Predicting protein functions with message passing algorithms
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TIT
2010
170views Education» more  TIT 2010»
13 years 2 months ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...
BMCBI
2010
167views more  BMCBI 2010»
13 years 7 months ago
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach
Background: Transcriptional gene regulation is one of the most important mechanisms in controlling many essential cellular processes, including cell development, cell-cycle contro...
Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pag...
ICPP
2002
IEEE
14 years 11 days ago
Region Synchronization in Message Passing Systems
The development of correct synchronization code for distributed programs is a challenging task. In this paper, we propose an aspect oriented technique for developing synchronizati...
Gurdip Singh, Ye Su
BIRD
2007
Springer
112views Bioinformatics» more  BIRD 2007»
14 years 1 months ago
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server
An online protein interaction server has been designed and implemented to make predictions for 256 nonhomologous protein-protein interaction sites using patch analysis. Predictions...
Susan Jones, Yoichi Mukarami
CCGRID
2004
IEEE
13 years 11 months ago
Routing and resource discovery in Phoenix Grid-enabled message passing library
We describe design and implementation of a "Gridenabled" message passing library, in the context of Phoenix message passing model. It supports (1) message routing betwee...
Kenji Kaneda, Kenjiro Taura, Akinori Yonezawa