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» Predicting the Effects of Gene Deletion
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AIPS
2009
13 years 8 months ago
Exploiting N-Gram Analysis to Predict Operator Sequences
N-gram analysis provides a means of probabilistically predicting the next item in a sequence. Due originally to Shannon, it has proven an effective technique for word prediction i...
Christian J. Muise, Sheila A. McIlraith, Jorge A. ...
BMCBI
2010
81views more  BMCBI 2010»
13 years 7 months ago
Discrete wavelet transform de-noising in eukaryotic gene splicing
Background: This paper compares the most common digital signal processing methods of exon prediction in eukaryotes, and also proposes a technique for noise suppression in exon pre...
Tina P. George, Tessamma Thomas
BMCBI
2010
116views more  BMCBI 2010»
13 years 7 months ago
Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences
Background: Precise and efficient methods for gene targeting are critical for detailed functional analysis of genomes and regulatory networks and for potentially improving the eff...
Jeffry D. Sander, Deepak Reyon, Morgan L. Maeder, ...
BMCBI
2007
136views more  BMCBI 2007»
13 years 7 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
ALMOB
2006
135views more  ALMOB 2006»
13 years 7 months ago
P-value based visualization of codon usage data
Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...