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2000
15 years 3 months ago
Prediction of the Number of Residue Contacts in Proteins
Knowing the number of residue contacts in a protein is crucial for deriving constraints useful in modeling protein folding, protein structure, and/or scoring remote homology searc...
Piero Fariselli, Rita Casadio
117
Voted
CCGRID
2009
IEEE
15 years 9 months ago
Performance under Failures of DAG-based Parallel Computing
— As the scale and complexity of parallel systems continue to grow, failures become more and more an inevitable fact for solving large-scale applications. In this research, we pr...
Hui Jin, Xian-He Sun, Ziming Zheng, Zhiling Lan, B...
IPPS
1999
IEEE
15 years 6 months ago
SCALA: A Framework for Performance Evaluation of Scalable Computing
Abstract. Conventional performance environments are based on pro ling and event instrumentation. It becomes problematic as parallel systems scale to hundreds of nodes and beyond. A...
Xian-He Sun, Mario Pantano, Thomas Fahringer, Zhao...
125
Voted
APPT
2009
Springer
15 years 9 months ago
Computational Performance of a Parallelized Three-Dimensional High-Order Spectral Element Toolbox
In this paper, a comprehensive performance review of an MPI-based high-order three-dimensional spectral element method C++ toolbox is presented. The focus is put on the performance...
Christoph Bosshard, Roland Bouffanais, Christian C...
SPAA
1990
ACM
15 years 6 months ago
Analysis of Multithreaded Architectures for Parallel Computing
Multithreading has been proposed as an architectural strategy for tolerating latency in multiprocessors and, through limited empirical studies, shown to offer promise. This paper ...
Rafael H. Saavedra-Barrera, David E. Culler, Thors...