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NAR
2011
194views Computer Vision» more  NAR 2011»
13 years 19 days ago
GreenPhylDB v2.0: comparative and functional genomics in plants
GreenPhylDB is a database designed for comparative and functional genomics based on complete genomes. Version 2 now contains sixteen full genomes of members of the plantae kingdom...
Mathieu Rouard, Valentin Guignon, Christelle Aluom...
NAR
2000
122views more  NAR 2000»
13 years 9 months ago
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www.toulouse. inra.fr/prodom.html ). ProDom-CG result...
Florence Corpet, Florence Servant, Jér&ocir...
BMCBI
2006
120views more  BMCBI 2006»
13 years 9 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner
NAR
2008
119views more  NAR 2008»
13 years 9 months ago
MALISAM: a database of structurally analogous motifs in proteins
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
NAR
2000
120views more  NAR 2000»
13 years 9 months ago
SCOP: a Structural Classification of Proteins database
The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classificati...
Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, ...