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    BMCBI
    2005
    119views more  BMCBI 2005»
    The distance-profile representation and its application to detection of distantly related protein families
    13 years 8 months ago
    The distance-profile representation and its application to detection of distantly related protein families
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    Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
    Chin-Jen Ku, Golan Yona
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    BMCBI
    2006
    112views more  BMCBI 2006»
    MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid se
    13 years 8 months ago
    MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid se
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    Background: Proteomics is the study of the proteome, and is critical to the understanding of cellular processes. Two central and related tasks of proteomics are protein identifica...
    Harald Barsnes, Svein-Ole Mikalsen, Ingvar Eidhamm...
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    BIBE
    2003
    IEEE
    183views Bioinformatics» more  BIBE 2003»
    Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
    14 years 1 months ago
    Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
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    We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
    Ozgur Ozturk, Hakan Ferhatosmanoglu
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    CIBCB
    2009
    IEEE
    172views Computational Biology» more  CIBCB 2009»
    Improved prediction of trans-membrane spans in proteins using an artificial neural network
    13 years 9 months ago
    Improved prediction of trans-membrane spans in proteins using an artificial neural network
    Download  www.meilerlab.org
    Tools for the identification of trans-membrane spans from the protein sequence are widely used in the experimental community. Computational structural biology seeks to increase the...
    Julia Koehler, Ralf Mueller, Jens Meiler
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    BMCBI
    2005
    159views more  BMCBI 2005»
    Columba: an integrated database of proteins, structures, and annotations
    13 years 8 months ago
    Columba: an integrated database of proteins, structures, and annotations
    Download  www.biomedcentral.com
    Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
    Silke Trißl, Kristian Rother, Heiko Mül...
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