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BMCBI
2008
128views more  BMCBI 2008»
13 years 8 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2007
173views more  BMCBI 2007»
13 years 8 months ago
Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model
Background: Modelling of time series data should not be an approximation of input data profiles, but rather be able to detect and evaluate dynamical changes in the time series dat...
Ryoko Morioka, Shigehiko Kanaya, Masami Y. Hirai, ...
BMCBI
2008
132views more  BMCBI 2008»
13 years 8 months ago
Clustering ionic flow blockade toggles with a Mixture of HMMs
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties with potential implications f...
Alexander G. Churbanov, Stephen Winters-Hilt
CORR
2010
Springer
79views Education» more  CORR 2010»
13 years 8 months ago
A Multi-hop Multi-source Algebraic Watchdog
In our previous work (`An Algebraic Watchdog for Wireless Network Coding'), we proposed a new scheme in which nodes can detect malicious behaviors probabilistically, police th...
MinJi Kim, Muriel Médard, João Barro...
ENTCS
2008
103views more  ENTCS 2008»
13 years 8 months ago
Distributed Markovian Bisimulation Reduction aimed at CSL Model Checking
The verification of quantitative aspects like performance and dependability by means of model checking has become an important and vivid area of research over the past decade. An ...
Stefan Blom, Boudewijn R. Haverkort, Matthias Kunt...