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BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
QEST
2007
IEEE
14 years 2 months ago
GRIP: Generic Representatives in PRISM
We give an overview of GRIP, a symmetry reduction tool for the probabilistic model checker PRISM, together with experimental results for a selection of example specifications. 1 ...
Alastair F. Donaldson, Alice Miller, David Parker
SOFSEM
2007
Springer
14 years 2 months ago
Games, Time, and Probability: Graph Models for System Design and Analysis
Digital technology is increasingly deployed in safety-critical situations. This calls for systematic design and verification methodologies that can cope with three major sources o...
Thomas A. Henzinger
ALMOB
2008
82views more  ALMOB 2008»
13 years 8 months ago
Protein sequence and structure alignments within one framework
Background: Protein structure alignments are usually based on very different techniques to sequence alignments. We propose a method which treats sequence, structure and even combi...
Gundolf Schenk, Thomas Margraf, Andrew E. Torda
PE
2011
Springer
214views Optimization» more  PE 2011»
13 years 3 months ago
Time-bounded reachability in tree-structured QBDs by abstraction
Structured QBDs by Abstraction Daniel Klink, Anne Remke, Boudewijn R. Haverkort, Fellow, IEEE, and Joost-Pieter Katoen, Member, IEEE Computer Society —This paper studies quantita...
Daniel Klink, Anne Remke, Boudewijn R. Haverkort, ...