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» Probabilistic base calling of Solexa sequencing data
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RECOMB
2003
Springer
14 years 8 months ago
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
We propose a framework for modeling sequence motifs based on the maximum entropy principle (MEP). We recommend approximating short sequence motif distributions with the maximum en...
Gene W. Yeo, Christopher B. Burge
BMCBI
2005
100views more  BMCBI 2005»
13 years 7 months ago
Speeding disease gene discovery by sequence based candidate prioritization
Background: Regions of interest identified through genetic linkage studies regularly exceed 30 centimorgans in size and can contain hundreds of genes. Traditionally this number is...
Euan A. Adie, Richard R. Adams, Kathryn L. Evans, ...
ICDE
2004
IEEE
116views Database» more  ICDE 2004»
14 years 9 months ago
An Efficient Algorithm for Mining Frequent Sequences by a New Strategy without Support Counting
Mining sequential patterns in large databases is an important research topic. The main challenge of mining sequential patterns is the high processing cost due to the large amount ...
Ding-Ying Chiu, Yi-Hung Wu, Arbee L. P. Chen
TIT
1998
96views more  TIT 1998»
13 years 7 months ago
Sequential Prediction of Individual Sequences Under General Loss Functions
Abstract— We consider adaptive sequential prediction of arbitrary binary sequences when the performance is evaluated using a general loss function. The goal is to predict on each...
David Haussler, Jyrki Kivinen, Manfred K. Warmuth
BMCBI
2007
127views more  BMCBI 2007»
13 years 7 months ago
CORRIE: enzyme sequence annotation with confidence estimates
Using a previously developed automated method for enzyme annotation, we report the reannotation of the ENZYME database and the analysis of local error rates per class. In control ...
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks,...