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» Probabilistic base calling of Solexa sequencing data
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CNSR
2007
IEEE
128views Communications» more  CNSR 2007»
14 years 2 months ago
A Novel Approach for Frequent Phrase Mining in Web Search Engine Query Streams
In this paper, conceptual frequency rate, a new frequency definition suitable for query stream mining, is introduced. An online single-pass algorithm called OFSD (Online Frequent...
M. Barouni-Ebrahimi, Ali A. Ghorbani
BMCBI
2005
292views more  BMCBI 2005»
13 years 7 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
BMCBI
2005
157views more  BMCBI 2005»
13 years 7 months ago
Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome bro
Background: To facilitate efficient selection and the prioritization of candidate complex disease susceptibility genes for association analysis, increasingly comprehensive annotat...
Judith E. Stenger, Hong Xu, Carol Haynes, Elizabet...
FUZZIEEE
2007
IEEE
14 years 2 months ago
Decoding Trace Peak Behaviour - A Neuro-Fuzzy Approach
— DNA sequence basecalling is commonly regarded as a solved problem, despite significant error rates being reflected in inaccuracies in databases and genome annotations. This has...
David Thornley, Stavros Petridis
BMCBI
2010
104views more  BMCBI 2010»
13 years 7 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton